Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790777
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 807
                    [wgsID] => 490
                    [fwdFile] => MSHD_41251_R1.fastq.gz
                    [fwdMd5] => 9caf1475694dac5cde70e7cab87b465c
                    [revFile] => MSHD_41251_R2.fastq.gz
                    [revMd5] => c20e018ad98ceb19f72d46154825cc80
                    [rawReads] => 1052973990
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028983
                    [enaRun] => ERR13658281
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1695
                    [wgsID] => 490
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-13 11:38:44
                    [dateCompleted] => 2024-09-14 12:28:28
                    [bamMd5] => 69da2f9ed6947b4b2976682e8d2fa831
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 943910812
                    [primaryReads] => 930081771
                    [mappedReads] => 941116363
                    [primaryMapped] => 927287322
                    [pairedReads] => 904914382
                    [meanInsertSize] => 349.98
                    [meanReadDepth] => 41.17
                    [variantsCalled] => 6248360
                    [variantsFiltered] => 5944926
                    [snpCount] => 4224381
                    [snpHom] => 1844077
                    [snpHet] => 2380304
                    [indelCount] => 1729886
                    [insHom] => 331178
                    [delHom] => 448454
                    [insHet] => 442075
                    [delHet] => 542709
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876987
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876987/MSHD_41251-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242