Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790782
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 812
                    [wgsID] => 495
                    [fwdFile] => MSHD_41256_R1.fastq.gz
                    [fwdMd5] => 61bcb61241f413ad0e021ac542a05d44
                    [revFile] => MSHD_41256_R2.fastq.gz
                    [revMd5] => 89e183fb33aa324e2a575a4578993397
                    [rawReads] => 965077990
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028985
                    [enaRun] => ERR13658283
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1697
                    [wgsID] => 495
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-13 11:39:50
                    [dateCompleted] => 2024-09-14 14:05:47
                    [bamMd5] => 63a8e98c7bb1865e9b7ef8944fbf91f8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 850005854
                    [primaryReads] => 837126568
                    [mappedReads] => 847247414
                    [primaryMapped] => 834368128
                    [pairedReads] => 811824900
                    [meanInsertSize] => 358.69
                    [meanReadDepth] => 37.39
                    [variantsCalled] => 6194313
                    [variantsFiltered] => 5917084
                    [snpCount] => 4196906
                    [snpHom] => 1873717
                    [snpHet] => 2323189
                    [indelCount] => 1729319
                    [insHom] => 336476
                    [delHom] => 455113
                    [insHet] => 435673
                    [delHet] => 535994
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876989
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876989/MSHD_41256-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242