Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190116
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 229
[wgsID] => 75
[fwdFile] => MWHD_29814_R1.fastq.gz
[fwdMd5] => fe55fb62b3b846d90d8c84cc15e95fcd
[revFile] => MWHD_29814_R2.fastq.gz
[revMd5] => a10dfd362e4b2f0673bf95d7a462ce95
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648179
[enaRun] => ERR11223850
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 68
[wgsID] => 75
[refGenome] => cf4
[dateSubmitted] => 2022-10-10 09:08:00
[dateCompleted] => 2022-10-11 06:16:00
[bamMd5] => 13ab0f3769f6117a7f70a9f806c8e6cc
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 993627377
[primaryReads] =>
[mappedReads] => 732489612
[primaryMapped] =>
[pairedReads] => 716815042
[meanInsertSize] => 437.99
[meanReadDepth] => 31.38
[variantsCalled] => 6594567
[variantsFiltered] => 6247279
[snpCount] => 4366128
[snpHom] => 1749886
[snpHet] => 2616242
[indelCount] => 1893350
[insHom] => 271942
[delHom] => 384401
[insHet] => 576837
[delHet] => 705324
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21775562
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775562/MWHD_29814-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242