Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA5818551
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 231
[wgsID] => 131
[fwdFile] => NB_12485_R1.fastq.gz
[fwdMd5] => 85b2c2fd5e48c19aa2d975f76b673f4f
[revFile] => NB_12485_R2.fastq.gz
[revMd5] => 4da9f792ad2da2243c6eef6e6a4b955e
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3500532
[enaRun] => ERR3478973
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 240
[wgsID] => 131
[refGenome] => cf4
[dateSubmitted] => 2022-11-21 09:08:00
[dateCompleted] => 2022-11-22 02:28:00
[bamMd5] => 95ce6a9455135b1906bee54029ea2b15
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 931532450
[primaryReads] =>
[mappedReads] => 918785695
[primaryMapped] =>
[pairedReads] => 900497538
[meanInsertSize] => 468.99
[meanReadDepth] => 42.74
[variantsCalled] => 6309729
[variantsFiltered] => 5920789
[snpCount] => 4126025
[snpHom] =>
[snpHet] =>
[indelCount] => 1805258
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21783007
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783007/NB_12485-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242