Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA5818552
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 232
[wgsID] => 132
[fwdFile] => NB_12486_R1.fastq.gz
[fwdMd5] => 898320ab7f59e82d3d0f226886cc351e
[revFile] => NB_12486_R2.fastq.gz
[revMd5] => cf860324e6d93492ecfedd67949e3424
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3500531
[enaRun] => ERR3478972
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 241
[wgsID] => 132
[refGenome] => cf4
[dateSubmitted] => 2022-11-21 09:09:00
[dateCompleted] => 2022-11-22 04:15:00
[bamMd5] => abbb745aa3929d978790628266b11888
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 948954017
[primaryReads] =>
[mappedReads] => 914620878
[primaryMapped] =>
[pairedReads] => 896168536
[meanInsertSize] => 461.46
[meanReadDepth] => 40.86
[variantsCalled] => 6230129
[variantsFiltered] => 5847424
[snpCount] => 4076484
[snpHom] =>
[snpHet] =>
[indelCount] => 1780717
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21783008
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783008/NB_12486-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242