Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190251
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 233
                    [wgsID] => 200
                    [fwdFile] => NB_29650_R1.fastq.gz
                    [fwdMd5] => 7fed0ede1a9ff72978ac5cdaf806e752
                    [revFile] => NB_29650_R2.fastq.gz
                    [revMd5] => d965878777d9bb3721983ba07dff8bb3
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682120
                    [enaRun] => ERR11274550
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 251
                    [wgsID] => 200
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-22 08:48:00
                    [dateCompleted] => 2022-11-23 03:43:00
                    [bamMd5] => b0b47f1a9a975165a9d76689fe052187
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1009438931
                    [primaryReads] => 
                    [mappedReads] => 977433296
                    [primaryMapped] => 
                    [pairedReads] => 956524520
                    [meanInsertSize] => 449.67
                    [meanReadDepth] => 46.90
                    [variantsCalled] => 6544820
                    [variantsFiltered] => 6164456
                    [snpCount] => 4300431
                    [snpHom] => 1889124
                    [snpHet] => 2411307
                    [indelCount] => 1875960
                    [insHom] => 290339
                    [delHom] => 407256
                    [insHet] => 551521
                    [delHet] => 669527
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375566
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375566/NB_29650-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242