Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA4966024
[wgsExptID] => 9
[Batch] => Oxford_6
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:15X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 471
[wgsID] => 117
[fwdFile] => NIT_27882_R1.fastq.gz
[fwdMd5] => a30aa9f4496211d726ec982b60886859
[revFile] => NIT_27882_R2.fastq.gz
[revMd5] => cc78ca5e55d065d505cb349816a79e85
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3476620
[enaRun] => ERR3454786
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 292
[wgsID] => 117
[refGenome] => cf4
[dateSubmitted] => 2023-02-14 10:12:00
[dateCompleted] => 2023-02-15 02:34:00
[bamMd5] => 62602e3cc718b9de9c8c1af0aba50afd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 677318654
[primaryReads] =>
[mappedReads] => 675190798
[primaryMapped] =>
[pairedReads] => 634191136
[meanInsertSize] => 327.96
[meanReadDepth] => 33.99
[variantsCalled] => 6472955
[variantsFiltered] => 6182858
[snpCount] => 4466163
[snpHom] =>
[snpHet] =>
[indelCount] => 1725936
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21789631
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789631/NIT_27882-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242