Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721112
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 614
[wgsID] => 364
[fwdFile] => NSDTR_39676_R1.fastq.gz
[fwdMd5] => 0e6452257b428da3ffdc7a2e32797991
[revFile] => NSDTR_39676_R2.fastq.gz
[revMd5] => f3df383880404d1d8ee5ada6ca5dc3ed
[rawReads] => 830904176
[FastqRCS] => 1
[enaExperiment] => ERX10632453
[enaRun] => ERR11203069
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 833
[wgsID] => 364
[refGenome] => cf4
[dateSubmitted] => 2023-06-21 14:37:00
[dateCompleted] => 2023-06-22 11:25:00
[bamMd5] => 147984d979e9faf177abf0b4e098ac3d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 805034184
[primaryReads] =>
[mappedReads] => 803918809
[primaryMapped] =>
[pairedReads] => 782898192
[meanInsertSize] => 438.61
[meanReadDepth] => 41.55
[variantsCalled] => 6328803
[variantsFiltered] => 5973690
[snpCount] => 4181623
[snpHom] => 1881669
[snpHet] => 2299954
[indelCount] => 1802382
[insHom] => 309424
[delHom] => 434282
[insHet] => 497813
[delHet] => 599569
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817150
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817150/NSDTR_39676-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242