Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721112
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 614
                    [wgsID] => 364
                    [fwdFile] => NSDTR_39676_R1.fastq.gz
                    [fwdMd5] => 0e6452257b428da3ffdc7a2e32797991
                    [revFile] => NSDTR_39676_R2.fastq.gz
                    [revMd5] => f3df383880404d1d8ee5ada6ca5dc3ed
                    [rawReads] => 830904176
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632453
                    [enaRun] => ERR11203069
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 833
                    [wgsID] => 364
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-21 14:37:00
                    [dateCompleted] => 2023-06-22 11:25:00
                    [bamMd5] => 147984d979e9faf177abf0b4e098ac3d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 805034184
                    [primaryReads] => 
                    [mappedReads] => 803918809
                    [primaryMapped] => 
                    [pairedReads] => 782898192
                    [meanInsertSize] => 438.61
                    [meanReadDepth] => 41.55
                    [variantsCalled] => 6328803
                    [variantsFiltered] => 5973690
                    [snpCount] => 4181623
                    [snpHom] => 1881669
                    [snpHet] => 2299954
                    [indelCount] => 1802382
                    [insHom] => 309424
                    [delHom] => 434282
                    [insHet] => 497813
                    [delHet] => 599569
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817150
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817150/NSDTR_39676-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242