Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190177
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 239
                    [wgsID] => 255
                    [fwdFile] => OH_5714_R1.fastq.gz
                    [fwdMd5] => 2e5c83a1846bb4adc3ceff55a1e51afd
                    [revFile] => OH_5714_R2.fastq.gz
                    [revMd5] => 2ce0e184318273996e54a21af647ed6f
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677688
                    [enaRun] => ERR11270100
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 391
                    [wgsID] => 255
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-19 12:05:00
                    [dateCompleted] => 2023-07-20 08:50:00
                    [bamMd5] => e5e176d0e7bc66dc2aeb603a6896a388
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 896038392
                    [primaryReads] => 
                    [mappedReads] => 891924749
                    [primaryMapped] => 
                    [pairedReads] => 872863186
                    [meanInsertSize] => 532.08
                    [meanReadDepth] => 42.46
                    [variantsCalled] => 6143228
                    [variantsFiltered] => 5776019
                    [snpCount] => 4039505
                    [snpHom] => 2111439
                    [snpHet] => 1928066
                    [indelCount] => 1745847
                    [insHom] => 343884
                    [delHom] => 469025
                    [insHet] => 433588
                    [delHet] => 530018
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782182
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782182/OH_5714-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242