Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190177
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 239
[wgsID] => 255
[fwdFile] => OH_5714_R1.fastq.gz
[fwdMd5] => 2e5c83a1846bb4adc3ceff55a1e51afd
[revFile] => OH_5714_R2.fastq.gz
[revMd5] => 2ce0e184318273996e54a21af647ed6f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10677688
[enaRun] => ERR11270100
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 391
[wgsID] => 255
[refGenome] => cf4
[dateSubmitted] => 2023-07-19 12:05:00
[dateCompleted] => 2023-07-20 08:50:00
[bamMd5] => e5e176d0e7bc66dc2aeb603a6896a388
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 896038392
[primaryReads] =>
[mappedReads] => 891924749
[primaryMapped] =>
[pairedReads] => 872863186
[meanInsertSize] => 532.08
[meanReadDepth] => 42.46
[variantsCalled] => 6143228
[variantsFiltered] => 5776019
[snpCount] => 4039505
[snpHom] => 2111439
[snpHet] => 1928066
[indelCount] => 1745847
[insHom] => 343884
[delHom] => 469025
[insHet] => 433588
[delHet] => 530018
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21782182
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782182/OH_5714-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242