Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115464416
[wgsExptID] => 28
[Batch] => BGI_1
[SeqLaboratory] => BGI Genomics
[Platform] => DNBSEQ
[InstrumentModel] => DNBSEQ-T7
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => BGI Genomic, PCR Free
[PcrFree] => Y
[SampleCount] => 1
[DateSubmitted] => 2024-02-20
[FastqID] => 725
[wgsID] => 440
[fwdFile] => POM_41145_R1.fastq.gz
[fwdMd5] => 077fddee043f9d0b9a8145818cd4fd84
[revFile] => POM_41145_R2.fastq.gz
[revMd5] => 2f53906d9b495e6302bccd7884b3469f
[rawReads] => 720034880
[FastqRCS] => 1
[enaExperiment] => ERX12206400
[enaRun] => ERR12833589
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1642
[wgsID] => 440
[refGenome] => cf4
[dateSubmitted] => 2024-04-03 08:04:43
[dateCompleted] => 2024-04-04 23:08:54
[bamMd5] => 067dc8cb11bcbce0ba78e4348bffd10b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 722356185
[primaryReads] => 719382067
[mappedReads] => 722205750
[primaryMapped] => 719231632
[pairedReads] => 706883174
[meanInsertSize] => 291.82
[meanReadDepth] => 39.77
[variantsCalled] => 6470364
[variantsFiltered] => 6159916
[snpCount] => 4349402
[snpHom] => 1804729
[snpHet] => 2544673
[indelCount] => 1820687
[insHom] => 326187
[delHom] => 445904
[insHet] => 498097
[delHet] => 595364
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ23873226
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ238/ERZ23873226/POM_41145-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242