Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115464416
                    [wgsExptID] => 28
                    [Batch] => BGI_1
                    [SeqLaboratory] => BGI Genomics
                    [Platform] => DNBSEQ
                    [InstrumentModel] => DNBSEQ-T7
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => BGI Genomic, PCR Free
                    [PcrFree] => Y
                    [SampleCount] => 1
                    [DateSubmitted] => 2024-02-20
                    [FastqID] => 725
                    [wgsID] => 440
                    [fwdFile] => POM_41145_R1.fastq.gz
                    [fwdMd5] => 077fddee043f9d0b9a8145818cd4fd84
                    [revFile] => POM_41145_R2.fastq.gz
                    [revMd5] => 2f53906d9b495e6302bccd7884b3469f
                    [rawReads] => 720034880
                    [FastqRCS] => 1
                    [enaExperiment] => ERX12206400
                    [enaRun] => ERR12833589
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1642
                    [wgsID] => 440
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-04-03 08:04:43
                    [dateCompleted] => 2024-04-04 23:08:54
                    [bamMd5] => 067dc8cb11bcbce0ba78e4348bffd10b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 722356185
                    [primaryReads] => 719382067
                    [mappedReads] => 722205750
                    [primaryMapped] => 719231632
                    [pairedReads] => 706883174
                    [meanInsertSize] => 291.82
                    [meanReadDepth] => 39.77
                    [variantsCalled] => 6470364
                    [variantsFiltered] => 6159916
                    [snpCount] => 4349402
                    [snpHom] => 1804729
                    [snpHet] => 2544673
                    [indelCount] => 1820687
                    [insHom] => 326187
                    [delHom] => 445904
                    [insHet] => 498097
                    [delHet] => 595364
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ23873226
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ238/ERZ23873226/POM_41145-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242