Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN21036532
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 885
[wgsID] => 456
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1150271400
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1662
[wgsID] => 456
[refGenome] => cf4
[dateSubmitted] => 2024-06-11 09:46:12
[dateCompleted] => 2024-06-12 01:59:45
[bamMd5] => 21e4c6b364c5f6c48946fccd4908dcd0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 386627607
[primaryReads] => 382962060
[mappedReads] => 386146820
[primaryMapped] => 382481273
[pairedReads] => 367812440
[meanInsertSize] => 377.34
[meanReadDepth] => 18.94
[variantsCalled] => 6410167
[variantsFiltered] => 6110945
[snpCount] => 4339652
[snpHom] => 1654577
[snpHet] => 2685075
[indelCount] => 1781024
[insHom] => 279352
[delHom] => 394051
[insHet] => 513415
[delHet] => 632397
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
