Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190222
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 242
[wgsID] => 160
[fwdFile] => PUG_32194_R1.fastq.gz
[fwdMd5] => 7ceb7e17ea7c4258e639b3b3b6f0abf8
[revFile] => PUG_32194_R2.fastq.gz
[revMd5] => 20a98d3fb3386af617ca7ccdc0a95c8c
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692177
[enaRun] => ERR11284568
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 333
[wgsID] => 160
[refGenome] => cf4
[dateSubmitted] => 2023-03-14 09:43:00
[dateCompleted] => 2023-03-15 04:09:00
[bamMd5] => 6e4eae9c32ec6328cbc344c089ef723c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 927843218
[primaryReads] =>
[mappedReads] => 926055328
[primaryMapped] =>
[pairedReads] => 908025860
[meanInsertSize] => 471.30
[meanReadDepth] => 40.27
[variantsCalled] => 5636153
[variantsFiltered] => 5257301
[snpCount] => 3631604
[snpHom] =>
[snpHet] =>
[indelCount] => 1632658
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21783010
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783010/PUG_32194-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242