Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190184
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 151
[wgsID] => 277
[fwdFile] => C_33833_R1.fastq.gz
[fwdMd5] => e997293c60d0c41e5d66634e1ce44327
[revFile] => C_33833_R2.fastq.gz
[revMd5] => b9a695c99166e8c271283d22680ef117
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665927
[enaRun] => ERR11257718
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 415
[wgsID] => 277
[refGenome] => cf4
[dateSubmitted] => 2023-04-05 15:17:00
[dateCompleted] => 2023-04-06 08:09:00
[bamMd5] => 6b760ac06e68bfe5edd7474adfab770d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 819234922
[primaryReads] =>
[mappedReads] => 817013630
[primaryMapped] =>
[pairedReads] => 802270716
[meanInsertSize] => 500.25
[meanReadDepth] => 45.15
[variantsCalled] => 6400300
[variantsFiltered] => 6024958
[snpCount] => 4212356
[snpHom] => 1891220
[snpHet] => 2321136
[indelCount] => 1823434
[insHom] => 304584
[delHom] => 421530
[insHet] => 515697
[delHet] => 621928
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21780958
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780958/PWC_33833-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242