Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189985
[wgsExptID] => 20
[Batch] => Edinburgh_10
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 7
[DateSubmitted] => 2018-10-23
[FastqID] => 244
[wgsID] => 47
[fwdFile] => RBT_35064_R1.fastq.gz
[fwdMd5] => 6bb44c29650c5528ff0982b80eca8b46
[revFile] => RBT_35064_R2.fastq.gz
[revMd5] => 1ce0011ea56fd26b99d516f9842f2e04
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10644422
[enaRun] => ERR11217531
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 80
[wgsID] => 47
[refGenome] => cf4
[dateSubmitted] => 2022-10-06 12:46:00
[dateCompleted] => 2022-10-07 12:48:00
[bamMd5] => 5db21e92b609968139621ccdf4588959
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 810119717
[primaryReads] =>
[mappedReads] => 644584978
[primaryMapped] =>
[pairedReads] => 628133650
[meanInsertSize] => 449.92
[meanReadDepth] => 33.53
[variantsCalled] => 6325168
[variantsFiltered] => 6028859
[snpCount] => 4217540
[snpHom] => 1830674
[snpHet] => 2386866
[indelCount] => 1821490
[insHom] => 291697
[delHom] => 410356
[insHet] => 515987
[delHet] => 640985
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21736961
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736961/RBT_35064-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242