Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189985
                    [wgsExptID] => 20
                    [Batch] => Edinburgh_10
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 7
                    [DateSubmitted] => 2018-10-23
                    [FastqID] => 244
                    [wgsID] => 47
                    [fwdFile] => RBT_35064_R1.fastq.gz
                    [fwdMd5] => 6bb44c29650c5528ff0982b80eca8b46
                    [revFile] => RBT_35064_R2.fastq.gz
                    [revMd5] => 1ce0011ea56fd26b99d516f9842f2e04
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10644422
                    [enaRun] => ERR11217531
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 80
                    [wgsID] => 47
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-06 12:46:00
                    [dateCompleted] => 2022-10-07 12:48:00
                    [bamMd5] => 5db21e92b609968139621ccdf4588959
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 810119717
                    [primaryReads] => 
                    [mappedReads] => 644584978
                    [primaryMapped] => 
                    [pairedReads] => 628133650
                    [meanInsertSize] => 449.92
                    [meanReadDepth] => 33.53
                    [variantsCalled] => 6325168
                    [variantsFiltered] => 6028859
                    [snpCount] => 4217540
                    [snpHom] => 1830674
                    [snpHet] => 2386866
                    [indelCount] => 1821490
                    [insHom] => 291697
                    [delHom] => 410356
                    [insHet] => 515987
                    [delHet] => 640985
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736961
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736961/RBT_35064-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242