Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190118
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 246
[wgsID] => 73
[fwdFile] => RW_34409_R1.fastq.gz
[fwdMd5] => fc0dcadb2a142321316c6cab30606ae6
[revFile] => RW_34409_R2.fastq.gz
[revMd5] => 582bd127b8c596b659c4276dafd31920
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648185
[enaRun] => ERR11223856
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 70
[wgsID] => 73
[refGenome] => cf4
[dateSubmitted] => 2022-10-11 12:25:00
[dateCompleted] => 2022-10-12 05:40:00
[bamMd5] => 5d90c6e1a7577552437695b0c50e6b0f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 996831675
[primaryReads] =>
[mappedReads] => 977463761
[primaryMapped] =>
[pairedReads] => 953138624
[meanInsertSize] => 405.29
[meanReadDepth] => 42.52
[variantsCalled] => 6307805
[variantsFiltered] => 5927866
[snpCount] => 4116664
[snpHom] => 1974212
[snpHet] => 2142452
[indelCount] => 1822178
[insHom] => 306442
[delHom] => 429349
[insHet] => 508092
[delHet] => 617956
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21775564
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775564/RW_34409-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242