Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269018
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 711
[wgsID] => 435
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1230409452
[FastqRCS] => 0
[enaExperiment] => SRX7136391
[enaRun] => SRR10441631
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1531
[wgsID] => 435
[refGenome] => cf4
[dateSubmitted] => 2024-02-15 09:22:09
[dateCompleted] => 2024-02-16 03:19:54
[bamMd5] => 4fb2f4a7a0215ded03cb5af7f2db1db8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 661106027
[primaryReads] => 609363493
[mappedReads] => 658929905
[primaryMapped] => 607187371
[pairedReads] => 552083172
[meanInsertSize] => 342.69
[meanReadDepth] => 24.45
[variantsCalled] => 6305592
[variantsFiltered] => 5957012
[snpCount] => 4035561
[snpHom] =>
[snpHet] =>
[indelCount] => 1930303
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
