Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099823
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 834
[wgsID] => 517
[fwdFile] => SAL_38441_R1.fastq.gz
[fwdMd5] => 788c613a2f3b2f5b88e9ae9e7808b7d9
[revFile] => SAL_38441_R2.fastq.gz
[revMd5] => e1eb24cdbf0c63d460523dee5c619133
[rawReads] => 917413462
[FastqRCS] => 1
[enaExperiment] => ERX13611294
[enaRun] => ERR14209074
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1735
[wgsID] => 517
[refGenome] => cf4
[dateSubmitted] => 2025-01-06 11:09:43
[dateCompleted] => 2025-01-07 13:45:19
[bamMd5] => 84ea2194915624bab5afbbef9778adc8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 732002143
[primaryReads] => 724087331
[mappedReads] => 731234282
[primaryMapped] => 723319470
[pairedReads] => 713356886
[meanInsertSize] => 338.94
[meanReadDepth] => 30.31
[variantsCalled] => 6749039
[variantsFiltered] => 6453290
[snpCount] => 4601704
[snpHom] => 1967729
[snpHet] => 2633975
[indelCount] => 1862274
[insHom] => 347626
[delHom] => 466349
[insHet] => 491543
[delHet] => 595523
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759332
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759332/SAL_38441-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242