Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099823
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 834
                    [wgsID] => 517
                    [fwdFile] => SAL_38441_R1.fastq.gz
                    [fwdMd5] => 788c613a2f3b2f5b88e9ae9e7808b7d9
                    [revFile] => SAL_38441_R2.fastq.gz
                    [revMd5] => e1eb24cdbf0c63d460523dee5c619133
                    [rawReads] => 917413462
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611294
                    [enaRun] => ERR14209074
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1735
                    [wgsID] => 517
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-06 11:09:43
                    [dateCompleted] => 2025-01-07 13:45:19
                    [bamMd5] => 84ea2194915624bab5afbbef9778adc8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 732002143
                    [primaryReads] => 724087331
                    [mappedReads] => 731234282
                    [primaryMapped] => 723319470
                    [pairedReads] => 713356886
                    [meanInsertSize] => 338.94
                    [meanReadDepth] => 30.31
                    [variantsCalled] => 6749039
                    [variantsFiltered] => 6453290
                    [snpCount] => 4601704
                    [snpHom] => 1967729
                    [snpHet] => 2633975
                    [indelCount] => 1862274
                    [insHom] => 347626
                    [delHom] => 466349
                    [insHet] => 491543
                    [delHet] => 595523
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759332
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759332/SAL_38441-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242