Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721096
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 586
[wgsID] => 348
[fwdFile] => SBT_37496_R1.fastq.gz
[fwdMd5] => 16e5acda833d4da8c7e037a02ded476b
[revFile] => SBT_37496_R2.fastq.gz
[revMd5] => d853b0854e47b7cb3e40063b0947bea6
[rawReads] => 928646568
[FastqRCS] => 1
[enaExperiment] => ERX10632425
[enaRun] => ERR11203041
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 805
[wgsID] => 348
[refGenome] => cf4
[dateSubmitted] => 2023-06-15 10:58:00
[dateCompleted] => 2023-06-16 06:28:00
[bamMd5] => 52a40ab6e3c82e27e8c8287645dfbdc7
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 914586627
[primaryReads] =>
[mappedReads] => 913800080
[primaryMapped] =>
[pairedReads] => 878188522
[meanInsertSize] => 366.99
[meanReadDepth] => 43.77
[variantsCalled] => 5961363
[variantsFiltered] => 5589363
[snpCount] => 3891109
[snpHom] => 2163936
[snpHet] => 1727173
[indelCount] => 1706644
[insHom] => 359700
[delHom] => 493664
[insHet] => 399280
[delHet] => 483231
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817152
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817152/SBT_37496-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242