Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721096
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 586
                    [wgsID] => 348
                    [fwdFile] => SBT_37496_R1.fastq.gz
                    [fwdMd5] => 16e5acda833d4da8c7e037a02ded476b
                    [revFile] => SBT_37496_R2.fastq.gz
                    [revMd5] => d853b0854e47b7cb3e40063b0947bea6
                    [rawReads] => 928646568
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632425
                    [enaRun] => ERR11203041
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 805
                    [wgsID] => 348
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-15 10:58:00
                    [dateCompleted] => 2023-06-16 06:28:00
                    [bamMd5] => 52a40ab6e3c82e27e8c8287645dfbdc7
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 914586627
                    [primaryReads] => 
                    [mappedReads] => 913800080
                    [primaryMapped] => 
                    [pairedReads] => 878188522
                    [meanInsertSize] => 366.99
                    [meanReadDepth] => 43.77
                    [variantsCalled] => 5961363
                    [variantsFiltered] => 5589363
                    [snpCount] => 3891109
                    [snpHom] => 2163936
                    [snpHet] => 1727173
                    [indelCount] => 1706644
                    [insHom] => 359700
                    [delHom] => 493664
                    [insHet] => 399280
                    [delHet] => 483231
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817152
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817152/SBT_37496-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242