Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721099
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 593
                    [wgsID] => 351
                    [fwdFile] => SBT_37823_R1.fastq.gz
                    [fwdMd5] => 49c64bf95f6857941ff40016229bd87f
                    [revFile] => SBT_37823_R2.fastq.gz
                    [revMd5] => fff35af470a239f034567de7052d8356
                    [rawReads] => 652145466
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632432
                    [enaRun] => ERR11203048
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 812
                    [wgsID] => 351
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-15 10:59:00
                    [dateCompleted] => 2023-06-15 22:42:00
                    [bamMd5] => 97e900d4c43e67a119ee87c69f6bfe2a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 462388315
                    [primaryReads] => 
                    [mappedReads] => 461673581
                    [primaryMapped] => 
                    [pairedReads] => 443622416
                    [meanInsertSize] => 287.35
                    [meanReadDepth] => 20.16
                    [variantsCalled] => 6358716
                    [variantsFiltered] => 6078914
                    [snpCount] => 4282791
                    [snpHom] => 1766248
                    [snpHet] => 2516543
                    [indelCount] => 1805932
                    [insHom] => 286709
                    [delHom] => 407884
                    [insHet] => 509902
                    [delHet] => 637310
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817153
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817153/SBT_37823-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242