Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721099
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 593
[wgsID] => 351
[fwdFile] => SBT_37823_R1.fastq.gz
[fwdMd5] => 49c64bf95f6857941ff40016229bd87f
[revFile] => SBT_37823_R2.fastq.gz
[revMd5] => fff35af470a239f034567de7052d8356
[rawReads] => 652145466
[FastqRCS] => 1
[enaExperiment] => ERX10632432
[enaRun] => ERR11203048
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 812
[wgsID] => 351
[refGenome] => cf4
[dateSubmitted] => 2023-06-15 10:59:00
[dateCompleted] => 2023-06-15 22:42:00
[bamMd5] => 97e900d4c43e67a119ee87c69f6bfe2a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 462388315
[primaryReads] =>
[mappedReads] => 461673581
[primaryMapped] =>
[pairedReads] => 443622416
[meanInsertSize] => 287.35
[meanReadDepth] => 20.16
[variantsCalled] => 6358716
[variantsFiltered] => 6078914
[snpCount] => 4282791
[snpHom] => 1766248
[snpHet] => 2516543
[indelCount] => 1805932
[insHom] => 286709
[delHom] => 407884
[insHet] => 509902
[delHet] => 637310
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817153
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817153/SBT_37823-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242