Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721103
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 599
[wgsID] => 355
[fwdFile] => SBT_38262_R1.fastq.gz
[fwdMd5] => d0a60a42821ab147660f8cbab9313c76
[revFile] => SBT_38262_R2.fastq.gz
[revMd5] => 7a89ad4626416bc40d4e355fef8a14d9
[rawReads] => 843513640
[FastqRCS] => 1
[enaExperiment] => ERX10632438
[enaRun] => ERR11203054
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 818
[wgsID] => 355
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 10:44:00
[dateCompleted] => 2023-06-17 02:33:00
[bamMd5] => c5702d83c2af699e62b30b1638ba07cb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 837565574
[primaryReads] =>
[mappedReads] => 836622173
[primaryMapped] =>
[pairedReads] => 813325464
[meanInsertSize] => 385.23
[meanReadDepth] => 40.52
[variantsCalled] => 5922465
[variantsFiltered] => 5524658
[snpCount] => 3846443
[snpHom] => 2210789
[snpHet] => 1635654
[indelCount] => 1686251
[insHom] => 372924
[delHom] => 510289
[insHet] => 377560
[delHet] => 452759
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817154
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817154/SBT_38262-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242