Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721104
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 600
[wgsID] => 356
[fwdFile] => SBT_38263_R1.fastq.gz
[fwdMd5] => fed16939060e24c73cadf3f801997d73
[revFile] => SBT_38263_R2.fastq.gz
[revMd5] => cd8557b0cf589ede40efe35a1527cb78
[rawReads] => 795931602
[FastqRCS] => 1
[enaExperiment] => ERX10632439
[enaRun] => ERR11203055
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 819
[wgsID] => 356
[refGenome] => cf4
[dateSubmitted] => 2023-06-15 11:03:00
[dateCompleted] => 2023-06-16 00:00:00
[bamMd5] => 207231a35a5414b7675ee7ae7315d3a5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 745123507
[primaryReads] =>
[mappedReads] => 744256425
[primaryMapped] =>
[pairedReads] => 717696556
[meanInsertSize] => 364.13
[meanReadDepth] => 35.50
[variantsCalled] => 6030397
[variantsFiltered] => 5654309
[snpCount] => 3937146
[snpHom] => 2132984
[snpHet] => 1804162
[indelCount] => 1725893
[insHom] => 353520
[delHom] => 486890
[insHet] => 414812
[delHet] => 501265
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817155
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817155/SBT_38263-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242