Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721104
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 600
                    [wgsID] => 356
                    [fwdFile] => SBT_38263_R1.fastq.gz
                    [fwdMd5] => fed16939060e24c73cadf3f801997d73
                    [revFile] => SBT_38263_R2.fastq.gz
                    [revMd5] => cd8557b0cf589ede40efe35a1527cb78
                    [rawReads] => 795931602
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632439
                    [enaRun] => ERR11203055
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 819
                    [wgsID] => 356
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-15 11:03:00
                    [dateCompleted] => 2023-06-16 00:00:00
                    [bamMd5] => 207231a35a5414b7675ee7ae7315d3a5
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 745123507
                    [primaryReads] => 
                    [mappedReads] => 744256425
                    [primaryMapped] => 
                    [pairedReads] => 717696556
                    [meanInsertSize] => 364.13
                    [meanReadDepth] => 35.50
                    [variantsCalled] => 6030397
                    [variantsFiltered] => 5654309
                    [snpCount] => 3937146
                    [snpHom] => 2132984
                    [snpHet] => 1804162
                    [indelCount] => 1725893
                    [insHom] => 353520
                    [delHom] => 486890
                    [insHet] => 414812
                    [delHet] => 501265
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817155
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817155/SBT_38263-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242