Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721109
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 608
[wgsID] => 361
[fwdFile] => SBT_39561_R1.fastq.gz
[fwdMd5] => 58ee66ed72153371efc80b6f097777a0
[revFile] => SBT_39561_R2.fastq.gz
[revMd5] => 6de91dc45903559e7de6893836d058de
[rawReads] => 779861570
[FastqRCS] => 1
[enaExperiment] => ERX10632447
[enaRun] => ERR11203063
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 827
[wgsID] => 361
[refGenome] => cf4
[dateSubmitted] => 2023-06-15 11:04:00
[dateCompleted] => 2023-06-16 02:31:00
[bamMd5] => c53221e5e2c920b4df3fd63bbc0e34c8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 759312939
[primaryReads] =>
[mappedReads] => 757005749
[primaryMapped] =>
[pairedReads] => 729297312
[meanInsertSize] => 375.08
[meanReadDepth] => 36.75
[variantsCalled] => 6306946
[variantsFiltered] => 5895614
[snpCount] => 4129963
[snpHom] => 1975395
[snpHet] => 2154568
[indelCount] => 1775319
[insHom] => 327866
[delHom] => 455587
[insHet] => 464596
[delHet] => 561908
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817157
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817157/SBT_39561-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242