Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721106
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 605
                    [wgsID] => 358
                    [fwdFile] => SC_39138_R1.fastq.gz
                    [fwdMd5] => 596d8b1646fe6c374bafb2a4fdabc39b
                    [revFile] => SC_39138_R2.fastq.gz
                    [revMd5] => e137974158cf6909c44489eb5c125a76
                    [rawReads] => 692916348
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632444
                    [enaRun] => ERR11203060
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 824
                    [wgsID] => 358
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-16 10:39:00
                    [dateCompleted] => 2023-06-16 22:35:00
                    [bamMd5] => f09bd69b4e8856753485045d472a76b5
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 608226272
                    [primaryReads] => 
                    [mappedReads] => 607448377
                    [primaryMapped] => 
                    [pairedReads] => 585236698
                    [meanInsertSize] => 344.64
                    [meanReadDepth] => 28.52
                    [variantsCalled] => 6610865
                    [variantsFiltered] => 6304210
                    [snpCount] => 4431764
                    [snpHom] => 1705292
                    [snpHet] => 2726472
                    [indelCount] => 1883930
                    [insHom] => 273669
                    [delHom] => 388332
                    [insHet] => 567208
                    [delHet] => 698087
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817158
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817158/SC_39138-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242