Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721106
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 605
[wgsID] => 358
[fwdFile] => SC_39138_R1.fastq.gz
[fwdMd5] => 596d8b1646fe6c374bafb2a4fdabc39b
[revFile] => SC_39138_R2.fastq.gz
[revMd5] => e137974158cf6909c44489eb5c125a76
[rawReads] => 692916348
[FastqRCS] => 1
[enaExperiment] => ERX10632444
[enaRun] => ERR11203060
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 824
[wgsID] => 358
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 10:39:00
[dateCompleted] => 2023-06-16 22:35:00
[bamMd5] => f09bd69b4e8856753485045d472a76b5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 608226272
[primaryReads] =>
[mappedReads] => 607448377
[primaryMapped] =>
[pairedReads] => 585236698
[meanInsertSize] => 344.64
[meanReadDepth] => 28.52
[variantsCalled] => 6610865
[variantsFiltered] => 6304210
[snpCount] => 4431764
[snpHom] => 1705292
[snpHet] => 2726472
[indelCount] => 1883930
[insHom] => 273669
[delHom] => 388332
[insHet] => 567208
[delHet] => 698087
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21817158
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817158/SC_39138-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242