Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189979
                    [wgsExptID] => 10
                    [Batch] => Oxford_7
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq4000
                    [ReadType] => 100bp:PAIRED:15X
                    [LibraryPrep] => WTCHG, PCR FREE
                    [PcrFree] => Y
                    [SampleCount] => 3
                    [DateSubmitted] => 
                    [FastqID] => 475
                    [wgsID] => 123
                    [fwdFile] => SCT_29475_R1.fastq.gz
                    [fwdMd5] => 5d50ee8503095234af98501b1e2dd945
                    [revFile] => SCT_29475_R2.fastq.gz
                    [revMd5] => 117a49d0f799b6f23750c288ae61d1eb
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10810953
                    [enaRun] => ERR11403162
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 234
                    [wgsID] => 123
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-20 11:12:00
                    [dateCompleted] => 2022-11-21 02:35:00
                    [bamMd5] => 672177ef1147138ae0d87399f982777c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 405355185
                    [primaryReads] => 
                    [mappedReads] => 404023763
                    [primaryMapped] => 
                    [pairedReads] => 393420594
                    [meanInsertSize] => 272.88
                    [meanReadDepth] => 19.71
                    [variantsCalled] => 5626995
                    [variantsFiltered] => 5390035
                    [snpCount] => 3857082
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1539318
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21789634
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789634/SCT_29475-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242