Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190119
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 248
[wgsID] => 72
[fwdFile] => SCWT_34784_R1.fastq.gz
[fwdMd5] => bfc3b24d15f4782fbef3acee240ca30f
[revFile] => SCWT_34784_R2.fastq.gz
[revMd5] => bb35b6c80fe86ef3d60fcd34ce38b8e1
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648190
[enaRun] => ERR11223861
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 71
[wgsID] => 72
[refGenome] => cf4
[dateSubmitted] => 2022-10-11 12:26:00
[dateCompleted] => 2022-10-12 06:10:00
[bamMd5] => a41eace8dd7376f7f6c46a0bd9dc832a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1004274693
[primaryReads] =>
[mappedReads] => 965705538
[primaryMapped] =>
[pairedReads] => 944053082
[meanInsertSize] => 456.65
[meanReadDepth] => 43.24
[variantsCalled] => 6435442
[variantsFiltered] => 6064905
[snpCount] => 4224210
[snpHom] => 1919801
[snpHet] => 2304409
[indelCount] => 1852127
[insHom] => 302163
[delHom] => 420236
[insHet] => 526988
[delHet] => 643472
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21775565
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775565/SCWT_34784-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242