Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721102
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 596
                    [wgsID] => 354
                    [fwdFile] => SCWT_37962_R1.fastq.gz
                    [fwdMd5] => 0b8d18c3b9c33d085c38b8123aa8bda2
                    [revFile] => SCWT_37962_R2.fastq.gz
                    [revMd5] => c338726e4b2da4a83309f549501ee0f6
                    [rawReads] => 842546436
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632435
                    [enaRun] => ERR11203051
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 815
                    [wgsID] => 354
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-16 10:28:00
                    [dateCompleted] => 2023-06-17 00:12:00
                    [bamMd5] => 999252e6ce22a3d52417df9b0f58054b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 639318471
                    [primaryReads] => 
                    [mappedReads] => 638094421
                    [primaryMapped] => 
                    [pairedReads] => 617179236
                    [meanInsertSize] => 381.66
                    [meanReadDepth] => 32.32
                    [variantsCalled] => 5828009
                    [variantsFiltered] => 5496349
                    [snpCount] => 3838887
                    [snpHom] => 2244400
                    [snpHet] => 1594487
                    [indelCount] => 1664683
                    [insHom] => 378964
                    [delHom] => 520115
                    [insHet] => 357092
                    [delHet] => 433006
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817159
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817159/SCWT_37962-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242