Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190120
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 249
[wgsID] => 71
[fwdFile] => SCWT_7230_R1.fastq.gz
[fwdMd5] => 2396c29c2352603c3a63e78b5b565d98
[revFile] => SCWT_7230_R2.fastq.gz
[revMd5] => 59969ee5f4f8b74850225dfd2122edeb
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648176
[enaRun] => ERR11223847
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 72
[wgsID] => 71
[refGenome] => cf4
[dateSubmitted] => 2022-10-12 13:09:00
[dateCompleted] => 2022-10-13 06:12:00
[bamMd5] => d17182d1c647708ed2e984141f2a7705
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 992739464
[primaryReads] =>
[mappedReads] => 988922692
[primaryMapped] =>
[pairedReads] => 968515200
[meanInsertSize] => 476.93
[meanReadDepth] => 44.56
[variantsCalled] => 6368907
[variantsFiltered] => 5952288
[snpCount] => 4140788
[snpHom] => 1948839
[snpHet] => 2191949
[indelCount] => 1822418
[insHom] => 305569
[delHom] => 424501
[insHet] => 509462
[delHet] => 622509
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21775566
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775566/SCWT_7230-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242