Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190100
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 250
[wgsID] => 306
[fwdFile] => SHP_34234_R1.fastq.gz
[fwdMd5] => 85b6092abde5146acd930a54f3e3bef4
[revFile] => SHP_34234_R2.fastq.gz
[revMd5] => 74f10aaffeb1211a448f3d20521f3524
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664703
[enaRun] => ERR11256494
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 267
[wgsID] => 306
[refGenome] => cf4
[dateSubmitted] => 2022-11-24 12:34:00
[dateCompleted] => 2022-11-25 07:47:00
[bamMd5] => a810349c8c49008788f036dfaa417107
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 940403015
[primaryReads] =>
[mappedReads] => 934653865
[primaryMapped] =>
[pairedReads] => 912081278
[meanInsertSize] => 501.77
[meanReadDepth] => 45.89
[variantsCalled] => 7703978
[variantsFiltered] => 7243095
[snpCount] => 5139514
[snpHom] => 2049600
[snpHet] => 3089914
[indelCount] => 2118883
[insHom] => 306335
[delHom] => 415023
[insHet] => 660478
[delHet] => 788146
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21778104
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778104/SHP_34234-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242