Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190224
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 253
[wgsID] => 133
[fwdFile] => SHY_12743_R1.fastq.gz
[fwdMd5] => e6b746a3a26cec57a950239fa5f7a29a
[revFile] => SHY_12743_R2.fastq.gz
[revMd5] => d9b5a54c37a7cb29bb3b5a548ed0522e
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686597
[enaRun] => ERR11278897
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 242
[wgsID] => 133
[refGenome] => cf4
[dateSubmitted] => 2022-11-21 11:25:00
[dateCompleted] => 2022-11-22 06:09:00
[bamMd5] => c1baecdacfb91edca9feb5e27730d4cd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1005658612
[primaryReads] =>
[mappedReads] => 990697852
[primaryMapped] =>
[pairedReads] => 971271048
[meanInsertSize] => 446.30
[meanReadDepth] => 44.87
[variantsCalled] => 7167329
[variantsFiltered] => 6773690
[snpCount] => 4771080
[snpHom] =>
[snpHet] =>
[indelCount] => 2016566
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21783012
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783012/SHY_12743-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242