Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189958
[wgsExptID] => 3
[Batch] => Oxford_2
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq 1000
[ReadType] => 100bp:PAIRED
[LibraryPrep] => WTCHG, NEBnext ultra
[PcrFree] => N
[SampleCount] => 4
[DateSubmitted] =>
[FastqID] => 451
[wgsID] => 89
[fwdFile] => SHY_25314_R1.fastq.gz
[fwdMd5] => 44d263b96bb5802f0b4c7a871b8542e1
[revFile] => SHY_25314_R2.fastq.gz
[revMd5] => 4a1de6e0506c64bb1379fdd4550287a9
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10158673
[enaRun] => ERR10691966
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 233
[wgsID] => 89
[refGenome] => cf4
[dateSubmitted] => 2022-11-20 11:13:00
[dateCompleted] => 2022-11-21 05:05:00
[bamMd5] => 4bdc9caacbfe12f6beb8d0e175471c59
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 828196885
[primaryReads] =>
[mappedReads] => 676957569
[primaryMapped] =>
[pairedReads] => 659560300
[meanInsertSize] => 346.19
[meanReadDepth] => 24.61
[variantsCalled] => 6687699
[variantsFiltered] => 6337291
[snpCount] => 4638596
[snpHom] => 2034408
[snpHet] => 2604188
[indelCount] => 1706846
[insHom] => 302119
[delHom] => 422348
[insHet] => 435438
[delHet] => 570646
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21790190
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790190/SHY_25314-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242