Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190163
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 254
                    [wgsID] => 230
                    [fwdFile] => SHY_32547_R1.fastq.gz
                    [fwdMd5] => 850fd3dfef3f4c349a8e6ec001508ef4
                    [revFile] => SHY_32547_R2.fastq.gz
                    [revMd5] => f354e73087e9fdda8639cef55a309a35
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679366
                    [enaRun] => ERR11271796
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 257
                    [wgsID] => 230
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-23 08:47:00
                    [dateCompleted] => 2022-11-24 11:32:00
                    [bamMd5] => df97d7f973dacb9d7561982674e4fb55
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1003830609
                    [primaryReads] => 
                    [mappedReads] => 981048015
                    [primaryMapped] => 
                    [pairedReads] => 960171256
                    [meanInsertSize] => 440.02
                    [meanReadDepth] => 33.57
                    [variantsCalled] => 7363569
                    [variantsFiltered] => 7021260
                    [snpCount] => 4984983
                    [snpHom] => 1896221
                    [snpHet] => 3088762
                    [indelCount] => 2049973
                    [insHom] => 295136
                    [delHom] => 401915
                    [insHet] => 633839
                    [delHet] => 767710
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517648
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517648/SHY_32547-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242