Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721127
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 610
                    [wgsID] => 379
                    [fwdFile] => SI_39662_R1.fastq.gz
                    [fwdMd5] => cb89dfeb4b96f8f3d85c919ea1031312
                    [revFile] => SI_39662_R2.fastq.gz
                    [revMd5] => 71bf18d6c5de7023f2591e69960fabf1
                    [rawReads] => 871018474
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632449
                    [enaRun] => ERR11203065
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 829
                    [wgsID] => 379
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-16 10:40:00
                    [dateCompleted] => 2023-06-17 03:14:00
                    [bamMd5] => 8a097a8a0aafc3bd98282ef7b40896c1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 879896689
                    [primaryReads] => 
                    [mappedReads] => 878780195
                    [primaryMapped] => 
                    [pairedReads] => 857665628
                    [meanInsertSize] => 404.35
                    [meanReadDepth] => 42.66
                    [variantsCalled] => 6646665
                    [variantsFiltered] => 6264034
                    [snpCount] => 4384865
                    [snpHom] => 1733370
                    [snpHet] => 2651495
                    [indelCount] => 1891085
                    [insHom] => 276849
                    [delHom] => 391482
                    [insHet] => 574834
                    [delHet] => 694081
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817162
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817162/SI_39662-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242