Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721147
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 611
[wgsID] => 400
[fwdFile] => SI_39666_R1.fastq.gz
[fwdMd5] => ac897160ccf69ee70db916b64e4b0b1b
[revFile] => SI_39666_R2.fastq.gz
[revMd5] => 2d8862a865d7bf99337d3dc44fb3ece0
[rawReads] => 815024060
[FastqRCS] => 1
[enaExperiment] => ERX10632450
[enaRun] => ERR11203066
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 830
[wgsID] => 400
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 10:41:00
[dateCompleted] => 2023-06-16 19:38:00
[bamMd5] => 876936af3128096810c6ff3ad75daafd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 823620921
[primaryReads] =>
[mappedReads] => 822668356
[primaryMapped] =>
[pairedReads] => 802440966
[meanInsertSize] => 404.40
[meanReadDepth] => 40.63
[variantsCalled] => 6802656
[variantsFiltered] => 6448524
[snpCount] => 4534663
[snpHom] => 1581721
[snpHet] => 2952942
[indelCount] => 1926653
[insHom] => 250018
[delHom] => 356870
[insHet] => 616079
[delHet] => 752538
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817163
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817163/SI_39666-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242