Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721147
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 611
                    [wgsID] => 400
                    [fwdFile] => SI_39666_R1.fastq.gz
                    [fwdMd5] => ac897160ccf69ee70db916b64e4b0b1b
                    [revFile] => SI_39666_R2.fastq.gz
                    [revMd5] => 2d8862a865d7bf99337d3dc44fb3ece0
                    [rawReads] => 815024060
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632450
                    [enaRun] => ERR11203066
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 830
                    [wgsID] => 400
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-16 10:41:00
                    [dateCompleted] => 2023-06-16 19:38:00
                    [bamMd5] => 876936af3128096810c6ff3ad75daafd
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 823620921
                    [primaryReads] => 
                    [mappedReads] => 822668356
                    [primaryMapped] => 
                    [pairedReads] => 802440966
                    [meanInsertSize] => 404.40
                    [meanReadDepth] => 40.63
                    [variantsCalled] => 6802656
                    [variantsFiltered] => 6448524
                    [snpCount] => 4534663
                    [snpHom] => 1581721
                    [snpHet] => 2952942
                    [indelCount] => 1926653
                    [insHom] => 250018
                    [delHom] => 356870
                    [insHet] => 616079
                    [delHet] => 752538
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817163
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817163/SI_39666-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242