Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189980
[wgsExptID] => 10
[Batch] => Oxford_7
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:15X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 3
[DateSubmitted] =>
[FastqID] => 473
[wgsID] => 121
[fwdFile] => ST_23245_R1.fastq.gz
[fwdMd5] => 4602e6b6568c6ff2a15af3c5e8baa301
[revFile] => ST_23245_R2.fastq.gz
[revMd5] => b33e21a1d0c8f1305c4014828fcbefbf
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10810951
[enaRun] => ERR11403160
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 167
[wgsID] => 121
[refGenome] => cf4
[dateSubmitted] => 2022-10-17 08:47:00
[dateCompleted] => 2022-10-18 13:37:00
[bamMd5] => 68a840e661b23d4c5478b18ac1759657
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 458852752
[primaryReads] =>
[mappedReads] => 457689435
[primaryMapped] =>
[pairedReads] => 446129524
[meanInsertSize] => 282.02
[meanReadDepth] => 23.31
[variantsCalled] => 5577828
[variantsFiltered] => 5335621
[snpCount] => 3798928
[snpHom] =>
[snpHet] =>
[indelCount] => 1543249
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21789635
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789635/ST_23245-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242