Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721132
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 564
[wgsID] => 385
[fwdFile] => STZ_19109_R1.fastq.gz
[fwdMd5] => d26ca7b14f112a152705e8c07a3cf914
[revFile] => STZ_19109_R2.fastq.gz
[revMd5] => de719b9043721d516129e2dacffd120d
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632402
[enaRun] => ERR11203019
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 783
[wgsID] => 385
[refGenome] => cf4
[dateSubmitted] => 2023-05-22 14:14:00
[dateCompleted] => 2023-05-23 10:14:00
[bamMd5] => 1ae3a365430861fb3023df2fa18cb893
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 681776315
[primaryReads] =>
[mappedReads] => 680946325
[primaryMapped] =>
[pairedReads] => 660766846
[meanInsertSize] => 395.62
[meanReadDepth] => 33.05
[variantsCalled] => 6709910
[variantsFiltered] => 6329917
[snpCount] => 4457672
[snpHom] => 1968654
[snpHet] => 2489018
[indelCount] => 1883302
[insHom] => 317660
[delHom] => 438339
[insHet] => 528785
[delHet] => 638550
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817167
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817167/STZ_19109-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242