Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721148
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 565
[wgsID] => 408
[fwdFile] => STZ_19110_R1.fastq.gz
[fwdMd5] => 9f7d6a8ffe7b8b853fa16919dbcea988
[revFile] => STZ_19110_R2.fastq.gz
[revMd5] => b12715b298314e79ebe787cae621a35a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632404
[enaRun] => ERR11203020
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 784
[wgsID] => 408
[refGenome] => cf4
[dateSubmitted] => 2023-05-22 14:15:00
[dateCompleted] => 2023-05-23 05:32:00
[bamMd5] => 7e193add31a9027a5c50f956702ee3d3
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 489120464
[primaryReads] =>
[mappedReads] => 487852227
[primaryMapped] =>
[pairedReads] => 472131464
[meanInsertSize] => 419.51
[meanReadDepth] => 24.14
[variantsCalled] => 6513166
[variantsFiltered] => 6195058
[snpCount] => 4371205
[snpHom] => 2011273
[snpHet] => 2359932
[indelCount] => 1834006
[insHom] => 331145
[delHom] => 456832
[insHet] => 489255
[delHet] => 591622
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817168
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817168/STZ_19110-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242