Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721133
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 566
[wgsID] => 386
[fwdFile] => STZ_19113_R1.fastq.gz
[fwdMd5] => a870d58011e9ce0702eda86e7b5158c8
[revFile] => STZ_19113_R2.fastq.gz
[revMd5] => eea6f863edc9df830cd3c8d3fab8ca45
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632405
[enaRun] => ERR11203021
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 785
[wgsID] => 386
[refGenome] => cf4
[dateSubmitted] => 2023-05-22 14:19:00
[dateCompleted] => 2023-05-23 08:57:00
[bamMd5] => 2c9c7de8ad7588e5f03cc9ba933b66f4
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 722768192
[primaryReads] =>
[mappedReads] => 721610351
[primaryMapped] =>
[pairedReads] => 700659884
[meanInsertSize] => 424.74
[meanReadDepth] => 35.75
[variantsCalled] => 6685928
[variantsFiltered] => 6297117
[snpCount] => 4427694
[snpHom] => 2018390
[snpHet] => 2409304
[indelCount] => 1880544
[insHom] => 325679
[delHom] => 447899
[insHet] => 522600
[delHet] => 624854
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817169
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817169/STZ_19113-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242