Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190102
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 256
                    [wgsID] => 295
                    [fwdFile] => STZ_21669_R1.fastq.gz
                    [fwdMd5] => f3abac7f413484c9cd0222d923d1093d
                    [revFile] => STZ_21669_R2.fastq.gz
                    [revMd5] => e223c5421cec34002e4d3c1b25f0c2a9
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664692
                    [enaRun] => ERR11256483
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 421
                    [wgsID] => 295
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-12-22 10:15:00
                    [dateCompleted] => 2022-12-23 03:28:00
                    [bamMd5] => 054e02c437e4e70298bc7c7f821c01a2
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 947163765
                    [primaryReads] => 
                    [mappedReads] => 873049852
                    [primaryMapped] => 
                    [pairedReads] => 854468402
                    [meanInsertSize] => 492.92
                    [meanReadDepth] => 45.40
                    [variantsCalled] => 6671602
                    [variantsFiltered] => 6273406
                    [snpCount] => 4394246
                    [snpHom] => 2024961
                    [snpHet] => 2369285
                    [indelCount] => 1890960
                    [insHom] => 324335
                    [delHom] => 442847
                    [insHet] => 532821
                    [delHet] => 633780
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778106
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778106/STZ_21669-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242