Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296822
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 630
                    [wgsID] => 7
                    [fwdFile] => STZ_35085_R1.fastq.gz
                    [fwdMd5] => 11f36434e997b718d9a5a72efd11f5d2
                    [revFile] => STZ_35085_R2.fastq.gz
                    [revMd5] => 4dfcabf17d7998e79cf97549a9119a23
                    [rawReads] => 843437116
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830375
                    [enaRun] => ERR11423067
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 43
                    [wgsID] => 7
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-11 16:12:00
                    [dateCompleted] => 2023-07-12 09:22:00
                    [bamMd5] => db086b91f6e22c0d0ac5eeaac443592e
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 747914059
                    [primaryReads] => 
                    [mappedReads] => 746983556
                    [primaryMapped] => 
                    [pairedReads] => 729438808
                    [meanInsertSize] => 365.32
                    [meanReadDepth] => 36.80
                    [variantsCalled] => 7099672
                    [variantsFiltered] => 6748145
                    [snpCount] => 4764712
                    [snpHom] => 1500444
                    [snpHet] => 3264268
                    [indelCount] => 1997118
                    [insHom] => 230329
                    [delHom] => 333156
                    [insHet] => 667656
                    [delHet] => 819093
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659502
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659502/STZ_35085-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242