Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN23314799
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 744
[wgsID] => 446
[fwdFile] => SRR16998416_1.fastq.gz
[fwdMd5] =>
[revFile] => SRR16998416_2.fastq.gz
[revMd5] =>
[rawReads] => 1334803564
[FastqRCS] => 0
[enaExperiment] => SRX13188655
[enaRun] => SRR16998416
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1652
[wgsID] => 446
[refGenome] => cf4
[dateSubmitted] => 2024-05-15 16:26:54
[dateCompleted] => 2024-05-16 11:23:15
[bamMd5] => fc29d64dec69e81c3d6bc7490a1fbf29
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 670099165
[primaryReads] => 665728184
[mappedReads] => 667242454
[primaryMapped] => 662871473
[pairedReads] => 648821294
[meanInsertSize] => 656.00
[meanReadDepth] => 34.94
[variantsCalled] => 7282384
[variantsFiltered] => 6923398
[snpCount] => 4897708
[snpHom] => 2165458
[snpHet] => 2732250
[indelCount] => 2038529
[insHom] => 380752
[delHom] => 495079
[insHet] => 557388
[delHet] => 654921
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
