Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190164
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 257
[wgsID] => 229
[fwdFile] => TS_32487_R1.fastq.gz
[fwdMd5] => 59e3c6971b5a50469f03e36291afc1fd
[revFile] => TS_32487_R2.fastq.gz
[revMd5] => f31f2853dbf6fa68a60c915acaa92070
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679333
[enaRun] => ERR11271763
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 258
[wgsID] => 229
[refGenome] => cf4
[dateSubmitted] => 2022-11-23 08:49:00
[dateCompleted] => 2022-11-25 01:58:00
[bamMd5] => d8eca661e4a9d13a0f30a27a581d44f9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 978247925
[primaryReads] =>
[mappedReads] => 888209574
[primaryMapped] =>
[pairedReads] => 870032962
[meanInsertSize] => 424.19
[meanReadDepth] => 29.28
[variantsCalled] => 6552379
[variantsFiltered] => 6245708
[snpCount] => 4414073
[snpHom] => 2026526
[snpHet] => 2387547
[indelCount] => 1842159
[insHom] => 329759
[delHom] => 443574
[insHet] => 499250
[delHet] => 606365
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21517649
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517649/TS_32487-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242