Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190254
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 259
[wgsID] => 199
[fwdFile] => TT_28001_R1.fastq.gz
[fwdMd5] => 0401a474298a33a65312120ee56b6219
[revFile] => TT_28001_R2.fastq.gz
[revMd5] => 1e319b97744dc4749538a1cbe5368d3e
[rawReads] => 985295564
[FastqRCS] => 1
[enaExperiment] => ERX10682119
[enaRun] => ERR11274549
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 344
[wgsID] => 199
[refGenome] => cf4
[dateSubmitted] => 2023-03-21 15:08:00
[dateCompleted] => 2023-03-22 10:36:00
[bamMd5] => 090845cc10f930c3f77eb43573fb23d0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 832679658
[primaryReads] =>
[mappedReads] => 830774213
[primaryMapped] =>
[pairedReads] => 813858726
[meanInsertSize] => 471.08
[meanReadDepth] => 41.26
[variantsCalled] => 6773354
[variantsFiltered] => 6409384
[snpCount] => 4503773
[snpHom] => 1843245
[snpHet] => 2660528
[indelCount] => 1917807
[insHom] => 286971
[delHom] => 399940
[insHet] => 574002
[delHet] => 700604
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21375565
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375565/TT_28001-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242