Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190010
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 260
[wgsID] => 60
[fwdFile] => TT_32776_R1.fastq.gz
[fwdMd5] => 9f5eb3472ad7517a7c128fe774766b09
[revFile] => TT_32776_R2.fastq.gz
[revMd5] => 32058c6b0e666685f2826c65a3163d09
[rawReads] => 950890956
[FastqRCS] => 1
[enaExperiment] => ERX7019038
[enaRun] => ERR7448284
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 105
[wgsID] => 60
[refGenome] => cf4
[dateSubmitted] => 2022-09-08 13:48:00
[dateCompleted] => 2022-09-09 08:18:00
[bamMd5] => 86cb77972c44e5b83cdcb5d91bad5cc0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 956081087
[primaryReads] =>
[mappedReads] => 921645726
[primaryMapped] =>
[pairedReads] => 904596014
[meanInsertSize] => 478.60
[meanReadDepth] => 48.27
[variantsCalled] => 6922900
[variantsFiltered] => 6512848
[snpCount] => 4574408
[snpHom] => 1835303
[snpHet] => 2739105
[indelCount] => 1951374
[insHom] => 280244
[delHom] => 391967
[insHet] => 597058
[delHet] => 729053
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21659986
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659986/TT_32776-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242