Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296808
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 625
                    [wgsID] => 3
                    [fwdFile] => TT_34729_R1.fastq.gz
                    [fwdMd5] => ac49b11c821dd6015021ed7f29e72418
                    [revFile] => TT_34729_R2.fastq.gz
                    [revMd5] => 1aa2fec3f96fd28ab69b2eb6f004cbfd
                    [rawReads] => 1108764934
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830370
                    [enaRun] => ERR11423062
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 30
                    [wgsID] => 3
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-07 10:57:00
                    [dateCompleted] => 2023-07-08 11:08:00
                    [bamMd5] => c7c3d0d0d402f1ad11ecf5d9c6697de9
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1097734732
                    [primaryReads] => 
                    [mappedReads] => 1096290919
                    [primaryMapped] => 
                    [pairedReads] => 1070907752
                    [meanInsertSize] => 362.87
                    [meanReadDepth] => 53.42
                    [variantsCalled] => 6857993
                    [variantsFiltered] => 6434726
                    [snpCount] => 4527258
                    [snpHom] => 1839703
                    [snpHet] => 2687555
                    [indelCount] => 1919851
                    [insHom] => 293892
                    [delHom] => 411472
                    [insHet] => 571283
                    [delHet] => 689692
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659503
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659503/TT_34729-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242