Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189973
[wgsExptID] => 8
[Batch] => Oxford_5
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:20X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 464
[wgsID] => 108
[fwdFile] => V_21485_R1.fastq.gz
[fwdMd5] => 8cb214510e784c32606c083be8ef6730
[revFile] => V_21485_R2.fastq.gz
[revMd5] => c12b6ace2b375232aca98458edbcb917
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10825750
[enaRun] => ERR11417904
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 285
[wgsID] => 108
[refGenome] => cf4
[dateSubmitted] => 2023-02-13 11:30:00
[dateCompleted] => 2023-02-14 05:26:00
[bamMd5] => 0d4553d98dd702a8ec97cac6a6996df9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1443181632
[primaryReads] =>
[mappedReads] => 1438233165
[primaryMapped] =>
[pairedReads] => 1406059914
[meanInsertSize] => 248.73
[meanReadDepth] => 27.89
[variantsCalled] => 5954200
[variantsFiltered] => 5648656
[snpCount] => 4018013
[snpHom] =>
[snpHet] =>
[indelCount] => 1639144
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21789627
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789627/V_21485-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242