Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189959
                    [wgsExptID] => 3
                    [Batch] => Oxford_2
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq 1000
                    [ReadType] => 100bp:PAIRED
                    [LibraryPrep] => WTCHG, NEBnext ultra
                    [PcrFree] => N
                    [SampleCount] => 4
                    [DateSubmitted] => 
                    [FastqID] => 450
                    [wgsID] => 88
                    [fwdFile] => V_23005_R1.fastq.gz
                    [fwdMd5] => 2eaa51710a24ae46bc80c8a9b9d0f782
                    [revFile] => V_23005_R2.fastq.gz
                    [revMd5] => 4a1d9fa6124dc66e34203eaac6a16b01
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10158672
                    [enaRun] => ERR10691965
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 271
                    [wgsID] => 88
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-06 09:49:00
                    [dateCompleted] => 2023-02-06 22:43:00
                    [bamMd5] => 2848bbe91a7db5591e73957a8a404dd0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 771867231
                    [primaryReads] => 
                    [mappedReads] => 769935787
                    [primaryMapped] => 
                    [pairedReads] => 756446744
                    [meanInsertSize] => 388.15
                    [meanReadDepth] => 27.41
                    [variantsCalled] => 5989398
                    [variantsFiltered] => 5663340
                    [snpCount] => 4034624
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1636413
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790191
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790191/V_23005-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242