Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099814
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 825
[wgsID] => 508
[fwdFile] => V_33124_R1.fastq.gz
[fwdMd5] => 5152d150723ff92fb7faedd6123ae89f
[revFile] => V_33124_R2.fastq.gz
[revMd5] => f05e7f383b5bd70cd8a3935e40b3671a
[rawReads] => 944160198
[FastqRCS] => 1
[enaExperiment] => ERX13611296
[enaRun] => ERR14209076
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1737
[wgsID] => 508
[refGenome] => cf4
[dateSubmitted] => 2025-01-06 11:12:38
[dateCompleted] => 2025-01-07 15:03:50
[bamMd5] => 7a1505540bb187fc2ced91039182f8f1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 728609082
[primaryReads] => 720136445
[mappedReads] => 727623488
[primaryMapped] => 719150851
[pairedReads] => 707479912
[meanInsertSize] => 357.97
[meanReadDepth] => 29.67
[variantsCalled] => 6364854
[variantsFiltered] => 6092113
[snpCount] => 4317406
[snpHom] => 1748771
[snpHet] => 2568635
[indelCount] => 1784446
[insHom] => 313513
[delHom] => 430515
[insHet] => 485540
[delHet] => 593160
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759334
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759334/V_33124-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242