Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099818
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 829
[wgsID] => 512
[fwdFile] => V_33492_R1.fastq.gz
[fwdMd5] => 97433e5e75fd81877543a5ee5b886155
[revFile] => V_33492_R2.fastq.gz
[revMd5] => 6cdc5c1b6ad33ce82b9efd44dd97054d
[rawReads] => 938672616
[FastqRCS] => 1
[enaExperiment] => ERX13611299
[enaRun] => ERR14209079
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1738
[wgsID] => 512
[refGenome] => cf4
[dateSubmitted] => 2025-01-06 11:13:40
[dateCompleted] => 2025-01-07 15:19:08
[bamMd5] => 2c4eadcf65b3a7cf73fbd90efa9dd667
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 755850528
[primaryReads] => 748940484
[mappedReads] => 755049754
[primaryMapped] => 748139710
[pairedReads] => 737946590
[meanInsertSize] => 358.46
[meanReadDepth] => 29.08
[variantsCalled] => 6294626
[variantsFiltered] => 6027196
[snpCount] => 4266571
[snpHom] => 1786843
[snpHet] => 2479728
[indelCount] => 1770113
[insHom] => 320958
[delHom] => 438132
[insHet] => 471168
[delHet] => 577367
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759325
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759325/V_33492-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242