Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190103
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 262
                    [wgsID] => 304
                    [fwdFile] => V_34007_R1.fastq.gz
                    [fwdMd5] => 4432810a0f0bcb94f85781b3aa28dc47
                    [revFile] => V_34007_R2.fastq.gz
                    [revMd5] => fb767012afa82751c7bda0813e711639
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664701
                    [enaRun] => ERR11256492
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 430
                    [wgsID] => 304
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-12-22 10:15:00
                    [dateCompleted] => 2022-12-23 03:44:00
                    [bamMd5] => f5ac4ced045252eb77315296c78b47c5
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 915701545
                    [primaryReads] => 
                    [mappedReads] => 911442413
                    [primaryMapped] => 
                    [pairedReads] => 890860688
                    [meanInsertSize] => 511.29
                    [meanReadDepth] => 48.15
                    [variantsCalled] => 6078296
                    [variantsFiltered] => 5702559
                    [snpCount] => 3974063
                    [snpHom] => 2120778
                    [snpHet] => 1853285
                    [indelCount] => 1738163
                    [insHom] => 353673
                    [delHom] => 481483
                    [insHet] => 424603
                    [delHet] => 510550
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778107
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778107/V_34007-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242