Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190103
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 262
[wgsID] => 304
[fwdFile] => V_34007_R1.fastq.gz
[fwdMd5] => 4432810a0f0bcb94f85781b3aa28dc47
[revFile] => V_34007_R2.fastq.gz
[revMd5] => fb767012afa82751c7bda0813e711639
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664701
[enaRun] => ERR11256492
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 430
[wgsID] => 304
[refGenome] => cf4
[dateSubmitted] => 2022-12-22 10:15:00
[dateCompleted] => 2022-12-23 03:44:00
[bamMd5] => f5ac4ced045252eb77315296c78b47c5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 915701545
[primaryReads] =>
[mappedReads] => 911442413
[primaryMapped] =>
[pairedReads] => 890860688
[meanInsertSize] => 511.29
[meanReadDepth] => 48.15
[variantsCalled] => 6078296
[variantsFiltered] => 5702559
[snpCount] => 3974063
[snpHom] => 2120778
[snpHet] => 1853285
[indelCount] => 1738163
[insHom] => 353673
[delHom] => 481483
[insHet] => 424603
[delHet] => 510550
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21778107
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778107/V_34007-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242