Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099819
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 830
                    [wgsID] => 513
                    [fwdFile] => V_34885_R1.fastq.gz
                    [fwdMd5] => b38c02be96f07e5deba379d56e74d73d
                    [revFile] => V_34885_R2.fastq.gz
                    [revMd5] => 2832292fdf41a538aa00a79f3ff3cd34
                    [rawReads] => 880631688
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611300
                    [enaRun] => ERR14209080
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1703
                    [wgsID] => 513
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-23 11:51:27
                    [dateCompleted] => 2024-12-24 06:39:37
                    [bamMd5] => 0a746afee2f98552e52c976d75000453
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 669263262
                    [primaryReads] => 662080649
                    [mappedReads] => 668071544
                    [primaryMapped] => 660888931
                    [pairedReads] => 650155034
                    [meanInsertSize] => 351.24
                    [meanReadDepth] => 27.06
                    [variantsCalled] => 6139235
                    [variantsFiltered] => 5856805
                    [snpCount] => 4150301
                    [snpHom] => 1919928
                    [snpHet] => 2230373
                    [indelCount] => 1715011
                    [insHom] => 347393
                    [delHom] => 472613
                    [insHet] => 417160
                    [delHet] => 509954
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759328
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759328/V_34885-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242